Another Word For It Patrick Durusau on Topic Maps and Semantic Diversity

December 17, 2012

taxize: Taxonomic search and phylogeny retrieval [R]

Filed under: Bioinformatics,Biomedical,Phylogenetic Trees,Searching,Taxonomy — Patrick Durusau @ 4:58 pm

taxize: Taxonomic search and phylogeny retrieval by Scott Chamberlain, Eduard Szoecs and Carl Boettiger.

From the documentation:

We are developing taxize as a package to allow users to search over many websites for species names (scientific and common) and download up- and downstream taxonomic hierarchical information – and many other things. The functions in the package that hit a specific API have a prefix and suffix separated by an underscore. They follow the format of service_whatitdoes. For example, gnr_resolve uses the Global Names Resolver API to resolve species names. General functions in the package that don’t hit a specific API don’t have two words separated by an underscore, e.g., classification. You need API keys for Encyclopedia of Life (EOL), the Universal Biological Indexer and Organizer (uBio), Tropicos, and Plantminer.

Just in case you need species names and/or taxonomic hierarchy information for your topic map.

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