## Archive for the ‘Text Corpus’ Category

### Identifying Speech/News Writers

Friday, December 2nd, 2016

David Smith’s post: Stylometry: Identifying authors of texts using R details the use of R to distinguish tweets by president-elect Donald Trump from his campaign staff. (Hmmm, sharing a Twitter account password, there’s bad security for you.)

The same techniques may distinguish texts delivered “live” versus those “inserted” into Congressional Record.

What other texts are ripe for distinguishing authors?

From the post:

Few people expect politicians to write every word they utter themselves; reliance on speechwriters and spokepersons is a long-established political practice. Still, it's interesting to know which statements are truly the politician's own words, and which are driven primarily by advisors or influencers.

Recently, David Robinson established a way of figuring out which tweets from Donald Trump's Twitter account came from him personally, as opposed to from campaign staff, whcih he verified by comparing the sentiment of tweets from Android vs iPhone devices. Now, Ali Arsalan Kazmi has used stylometric analysis to investigate the provenance of speeches by the Prime Minister of Pakistan

A small amount of transparency can go a long way.

Email archives anyone?

### Workflow for R & Shakespeare

Friday, October 2nd, 2015

A new data processing workflow for R: dplyr, magrittr, tidyr, ggplot2

From the post:

Over the last year I have changed my data processing and manipulation workflow in R dramatically. Thanks to some great new packages like dplyr, tidyr and magrittr (as well as the less-new ggplot2) I've been able to streamline code and speed up processing. Up until 2014, I had used essentially the same R workflow (aggregate, merge, apply/tapply, reshape etc) for more than 10 years. I have added a few improvements over the years in the form of functions in packages doBy, reshape2 and plyr and I also flirted with the package data.table (which I found to be much faster for big datasets but the syntax made it difficult to work with) — but the basic flow has remained remarkably similar. Until now…

Given how much I've enjoyed the speed and clarity of the new workflow, I thought I would share a quick demonstration.

In this example, I am going to grab data from a sample SQL database provided by Google via Google BigQuery and then give examples of manipulation using dplyr, magrittr and tidyr (and ggplot2 for visualization).

This is a great introduction to a work flow in R that you can generalize for your own purposes.

Word counts won’t impress your English professor but you will have a base for deeper analysis of Shakespeare.

I first saw this in a tweet by Christophe Lalanne.

### Annotated Chemical Patent Corpus: A Gold Standard for Text Mining

Friday, October 10th, 2014

Annotated Chemical Patent Corpus: A Gold Standard for Text Mining by Saber A. Akhondi, et al. (Published: September 30, 2014 DOI: 10.1371/journal.pone.0107477)

Abstract:

Exploring the chemical and biological space covered by patent applications is crucial in early-stage medicinal chemistry activities. Patent analysis can provide understanding of compound prior art, novelty checking, validation of biological assays, and identification of new starting points for chemical exploration. Extracting chemical and biological entities from patents through manual extraction by expert curators can take substantial amount of time and resources. Text mining methods can help to ease this process. To validate the performance of such methods, a manually annotated patent corpus is essential. In this study we have produced a large gold standard chemical patent corpus. We developed annotation guidelines and selected 200 full patents from the World Intellectual Property Organization, United States Patent and Trademark Office, and European Patent Office. The patents were pre-annotated automatically and made available to four independent annotator groups each consisting of two to ten annotators. The annotators marked chemicals in different subclasses, diseases, targets, and modes of action. Spelling mistakes and spurious line break due to optical character recognition errors were also annotated. A subset of 47 patents was annotated by at least three annotator groups, from which harmonized annotations and inter-annotator agreement scores were derived. One group annotated the full set. The patent corpus includes 400,125 annotations for the full set and 36,537 annotations for the harmonized set. All patents and annotated entities are publicly available at www.biosemantics.org.

Highly recommended both as a “gold standard” for chemical patent text mining but also as the state of the art in developing such a standard.

To say nothing of annotation as a means of automatic creation of topic maps where entities are imbued with subject identity properties.

I first saw this in a tweet by ChemConnector.

### GATE 8.0

Monday, May 12th, 2014

GATE (general architecture for text engineering) 8.0

### Release 8.0 (May 11th 2014)

If the installer does not work for you, you can download one of the following packages instead. See the user guide for installation instructions:

The BIN, SRC and ALL packages all include the full set of GATE plugins and all the libraries GATE requires to run, including sample trained models for the LingPipe and OpenNLP plugins.

Version 8.0 requires Java 7 or 8, and Mac users must install the full JDK, not just the JRE.

Four major changes in this release:

1. Requires Java 7 or later to run
3. ANNIE (named entity annotation pipeline) Refreshed.
4. Tools for Crowd Sourcing.

Not bad for a project that will turn twenty (20) next year!

More resources:

UsersGuide

Nightly Snapshots

Mastering a substantial portion of GATE should keep you in nearly constant demand.

### NLTK 2.1 – Working with Text Corpora

Sunday, June 9th, 2013

NLTK 2.1 – Working with Text Corpora by Vsevolod Dyomkin.

From the post:

Let’s return to start of chapter 2 and explore the tools needed to easily and efficiently work with various linguistic resources.

What are the most used and useful corpora? This is a difficult question to answer because different problems will likely require specific annotations and often a specific corpus. There are even special conferences dedicated to corpus linguistics.

Here’s a list of the most well-known general-purpose corpora:

• Brown Corpus – one of the first big corpora and the only one in the list really easily accessible – we’ve already worked with it in the first chapter
• Penn Treebank – Treebank is a corpus of sentences annotated with their constituency parse trees so that they can be used to train and evaluate parsers
• Reuters Corpus (not to be confused with the ApteMod version provided with NLTK)
• British National Corpus (BNC) – a really huge corpus, but, unfortunately, not freely available

Another very useful resource which isn’t structured specifically as academic corpora mentioned above, but at the same time has other dimensions of useful connections and annotations is Wikipedia. And there’s being a lot of interesting linguistic research performed with it.

Besides there are two additional valuable language resources that can’t be classified as text corpora at all, but rather as language databases: WordNet and Wiktionary. We have already discussed CL-NLP interface to Wordnet. And we’ll touch working with Wiktionary in this part.

Vsevolod continues to recast the NLTK into Lisp.

Learning corpus processing along with Lisp. How can you lose?

### Lincoln Logarithms: Finding Meaning in Sermons

Thursday, February 28th, 2013

Lincoln Logarithms: Finding Meaning in Sermons

From the webpage:

Just after his death, Abraham Lincoln was hailed as a luminary, martyr, and divine messenger. We wondered if using digital tools to analyze a digitized collection of elegiac sermons might uncover patterns or new insights about his memorialization.

We explored the power and possibility of four digital tools—MALLET, Voyant, Paper Machines, and Viewshare. MALLET, Paper Machines, and Voyant all examine text. They show how words are arranged in texts, their frequency, and their proximity. Voyant and Paper Machines also allow users to make visualizations of word patterns. Viewshare allows users to create timelines, maps, and charts of bodies of material. In this project, we wanted to experiment with understanding what these tools, which are in part created to reveal, could and could not show us in a small, but rich corpus. What we have produced is an exploration of the possibilities and the constraints of these tools as applied to this collection.

The resulting digital collection: The Martyred President: Sermons Given on the Assassination of President Lincoln.

Let’s say this is not an “ahistorical” view. 😉

Good example of exploring “unstructured” data.

A first step before authoring a topic map.

### NEH Institute Working With Text In a Digital Age

Saturday, September 1st, 2012

NEH Institute Working With Text In a Digital Age

From the webpage:

The goal of this demo/sample code is to provide a platform which institute participants can use to complete an exercise to create a miniature digital edition. We will use these editions as concrete examples for discussion of decisions and issues to consider when creating digital editions from TEI XML, annotations and other related resources.

Some specific items for consideration and discussion through this exercise :

• Creating identifiers for your texts.
• Establishing markup guidelines and best practices.
• Use of inline annotations versus standoff markup.
• Dealing with overlapping hierarchies.
• OAC (Open Annotation Collaboration)
• Leveraging annotation tools.
• Distribution formats: optimzing for display vs for enabling data reuse.

Excellent resource!

Offers a way to learn/test digital edition skills.

You can use it as a template to produce similar materials with texts of greater interest to you.

The act of encoding asks what subjects you are going to recognize and under what conditions? Good practice for topic map construction.

Not to mention that historical editions of a text have made similar, possibly differing decisions on the same text.

Topic maps are a natural way to present such choices on their own merits, as well as being able to compare and contrast those choices.

I first saw this at The banquet of the digital scholars.

### The banquet of the digital scholars

Saturday, September 1st, 2012

The banquet of the digital scholars

The actual workshop title: Humanities Hackathon on editing Athenaeus and on the Reinvention of the Edition in a Digital Space

October 10-12, 2012
Universität Leipzig (ULEI) & Deutsches Archäologisches Institut (DAI) Berlin

Abstract:

The University of Leipzig will host a hackathon that addresses two basic tasks. On the one hand, we will focus upon the challenges of creating a digital edition for the Greek author Athenaeus, whose work cites more than a thousand earlier sources and is one of the major sources for lost works of Greek poetry and prose. At the same time, we use the case Athenaeus to develop our understanding of to organize a truly born-digital edition, one that not only includes machine actionable citations and variant readings but also collations of multiple print editions, metrical analyses, named entity identification, linguistic features such as morphology, syntax, word sense, and co-reference analysis, and alignment between the Greek original and one or more later translations.

After some details:

Overview:
The Deipnosophists (Δειπνοσοφισταί, or “Banquet of the Sophists”) by Athenaeus of Naucratis is a 3rd century AD fictitious account of several banquet conversations on food, literature, and arts held in Rome by twenty-two learned men. This complex and fascinating work is not only an erudite and literary encyclopedia of a myriad of curiosities about classical antiquity, but also an invaluable collection of quotations and text re-uses of ancient authors, ranging from Homer to tragic and comic poets and lost historians. Since the large majority of the works cited by Athenaeus is nowadays lost, this compilation is a sort of reference tool for every scholar of Greek theater, poetry, historiography, botany, zoology, and many other topics.

Athenaeus’ work is a mine of thousands of quotations, but we still lack a comprehensive survey of its sources. The aim of this “humanities hackathon” is to provide a case study for drawing a spectrum of quoting habits of classical authors and their attitude to text reuse. Athenaeus, in fact, shapes a library of forgotten authors, which goes beyond the limits of a physical building and becomes an intellectual space of human knowledge. By doing so, he is both a witness of the Hellenistic bibliographical methods and a forerunner of the modern concept of hypertext, where sequential reading is substituted by hierarchical and logical connections among words and fragments of texts. Quantity, variety, and precision of Athenaeus’ citations make the Deipnosophists an excellent training ground for the development of a digital system of reference linking for primary sources. Athenaeus’ standard citation includes (a) the name of the author with additional information like ethnic origin and literary category, (b) the title of the work, and (c) the book number (e.g., Deipn. 2.71b). He often remembers the amount of papyrus scrolls of huge works (e.g., 6.229d-e; 6.249a), while distinguishing various editions of the same comedy (e.g., 1.29a; 4.171c; 6.247c; 7.299b; 9.367f) and different titles of the same work (e.g., 1.4e).

He also adds biographical information to identify homonymous authors and classify them according to literary genres, intellectual disciplines and schools (e.g., 1.13b; 6.234f; 9.387b). He provides chronological and historical indications to date authors (e.g., 10.453c; 13.599c), and he often copies the first lines of a work following a method that probably goes back to the Pinakes of Callimachus (e.g., 1.4e; 3.85f; 8.342d; 5.209f; 13.573f-574a).

Last but not least, the study of Athenaeus’ “citation system” is also a great methodological contribution to the domain of “fragmentary literature”, since one of the main concerns of this field is the relation between the fragment (quotation) and its context of transmission. Having this goal in mind, the textual analysis of the Deipnosophists will make possible to enumerate a series of recurring patterns, which include a wide typology of textual reproductions and linguistic features helpful to identify and classify hidden quotations of lost authors.

The 21st century has “big data” in the form of sensor streams and Twitter feeds, but “complex data” in the humanities pre-dates “big data” by a considerable margin.

If you are interested in being challenged by complexity and not simply the size of your data, take a closer look at this project.

Greek is a little late to be of interest to me but there are older texts that could benefit from a similar treatment.

BTW, while you are thinking about this project/text, consider how you would merge prior scholarship, digital and otherwise, with what originates here and what follows it in the decades to come.

### Finding Structure in Text, Genome and Other Symbolic Sequences

Saturday, July 14th, 2012

Finding Structure in Text, Genome and Other Symbolic Sequences by Ted Dunning. (thesis, 1998)

Abstract:

The statistical methods derived and described in this thesis provide new ways to elucidate the structural properties of text and other symbolic sequences. Generically, these methods allow detection of a difference in the frequency of a single feature, the detection of a difference between the frequencies of an ensemble of features and the attribution of the source of a text. These three abstract tasks suffice to solve problems in a wide variety of settings. Furthermore, the techniques described in this thesis can be extended to provide a wide range of additional tests beyond the ones described here.

A variety of applications for these methods are examined in detail. These applications are drawn from the area of text analysis and genetic sequence analysis. The textually oriented tasks include finding interesting collocations and cooccurent phrases, language identification, and information retrieval. The biologically oriented tasks include species identification and the discovery of previously unreported long range structure in genes. In the applications reported here where direct comparison is possible, the performance of these new methods substantially exceeds the state of the art.

Overall, the methods described here provide new and effective ways to analyse text and other symbolic sequences. Their particular strength is that they deal well with situations where relatively little data are available. Since these methods are abstract in nature, they can be applied in novel situations with relative ease.

Recently posted but dating from 1998.

Older materials are interesting because the careers of their authors can be tracked, say at DBPL Ted Dunning.

Or it can lead you to check an author in Citeseer:

Abstract:

Much work has been done on the statistical analysis of text. In some cases reported in the literature, inappropriate statistical methods have been used, and statistical significance of results have not been addressed. In particular, asymptotic normality assumptions have often been used unjustifiably, leading to flawed results.This assumption of normal distribution limits the ability to analyze rare events. Unfortunately rare events do make up a large fraction of real text.However, more applicable methods based on likelihood ratio tests are available that yield good results with relatively small samples. These tests can be implemented efficiently, and have been used for the detection of composite terms and for the determination of domain-specific terms. In some cases, these measures perform much better than the methods previously used. In cases where traditional contingency table methods work well, the likelihood ratio tests described here are nearly identical.This paper describes the basis of a measure based on likelihood ratios that can be applied to the analysis of text.

Which has over 600 citations, only one of which is from the author. (I could comment about a well know self-citing ontologist but I won’t.)

The observations in the thesis about “large” data sets are dated but it merits your attention as fundamental work in the field of textual analysis.

As a bonus, it is quite well written and makes an enjoyable read.

### Corpus of Erotica Stories

Sunday, December 4th, 2011

Corpus of Erotica Stories from InfoChimps.

From the webpage:

Excellent resource for working with natural language processing and machine learning. This corpus consists of 4771 raw text erotica stories collected from www.textfiles.com/sex/EROTICA. A logical flow from the encouragement of writing on BBSes, people have been writing some form of erotica or sexual narrative for others for quite some time. With the advent of Fidonet and later Usenet, these stories achieved wider and wider distribution. Unfortunately, the nature of erotica is that it is often uncredited, undated, and hard to fix in time. As a result, you might be looking at stories much older or much newer than you might think.

Well, you have been looking for an interesting text for NLP and machine learning. Here’s your chance.

The subjects just abound.

One imagines the same could be done with an appropriate Twitter stream and writing it to a file.