From the homepage (worth repeating in full):
BioNLP is an initiative by the Center for Computational Pharmacology at the University of Colorado Denver Health Sciences Center to create and distribute code, software, and data for applying natural language processing techniques to biomedical texts. There are many projects associated with BioNLP.
Projects
- BioLemmatizer: a biomedical literature specific lemmatizer.
- BioNLP-Corpora: a repository of biologically and linguistically annotated corpora and biomedical datasets. This project includes
- Colorado Richly Annotated Full-Text Corpus (CRAFT)
- PICorpus
- GeneHomonym
- Annotation Projects
- MEDLINE Mining projects
- Anaphora Corpus
- TestSuite Corpora
- BioNLP-UIMA: Unstructured Information Management Architecture (UIMA) components geared towards the use and evaluation of tools for biomedical natural language processing, including tools for our own OpenDMAP and MutationFinder use.
- common: a library of utility code for common tasks
- Knowtator: a Protege plug-in for text annotation.
- medline-xml-parser: a code library containing an XML parser for the 2012 Medline XML distribution format
- MutationFinder: an information extraction system for extracting descriptions of point mutations from free text.
- OboAnalyzer: an analysis tool to detect OBO ontology terms that use different linguistic conventions for expressing similar semantics.
- OpenDMAP: an ontology-driven, rule-based concept analysis and information extraction system
- Parentheses Classifier: a classifier for the content of parenthesized text
- Simple Semantic Classifier: a text classifier for OBO domains
- uima-shims: a library of simple interfaces designed to facilitate the development of type-system-independent UIMA components
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