Another Word For It Patrick Durusau on Topic Maps and Semantic Diversity

June 21, 2012

Graph DB + Bioinformatics: Bio4j,…

Filed under: Amazon Web Services AWS,Bioinformatics,Neo4j — Patrick Durusau @ 3:04 pm

Graph DB + Bioinformatics: Bio4j, recent applications and future directions by Pablo Pareja.

If you haven’t seen one of Pablo’s slide decks on Bio4j, get ready for a real treat!

Let me quote the numbers from slide 42, which is entitled: “Bio4j + MG7 + 24 Chip-Seq samples”

157 639 502 nodes

742 615 705 relationships

632 832 045 properties

149 relationship types

44 node types

And it works just fine!

Granting he is not running this on his cellphone but if you are going to process serious data, you need serious computing power. (OK, he uses Amazon Web Services. Like I said, not his cellphone.)

Did I mention everything done by Oh no sequences! (www.ohnosequences.com) is 100% Open source?

There is much to learn here. Enjoy!

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