Cool GO annotation visualizations with Gephi + Bio4j
Sometimes really awesome things just show up in my inbox! This is one of them.
From the post:
After a few months without finding the opportunity to play with Gephi, it was already time to dedicate a lab day to this.
I thought that a good feature would be having the equivalent .gexf file for the current graph representation available at the tab “GoAnnotation Graph Viz”; so that you could play around with it in Gephi adapting it to your specific needs.
Then I got down to work and this is what happened:
Here is the visualization that got my interest up:
http://bio4j.com/imgs/EHEC_MolecularFunction_SeaDragon/
Enjoy!