Mining Bio4j data: finding topological patterns in PPI networks
From the post:
That’s where I came up with the idea of looking for topological patterns through a large sub-set of the Protein-Protein interactions network included in Bio4j; – rather than focusing in a few proteins selected a priori.
I decided to mine the data in order to find circuits/simple cycles of length 3 where at least one protein is from Swiss-Prot dataset:
Interesting use of the Neo4j Cypher query language to look for topological patterns.