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August 17, 2013

Parallel Astronomical Data Processing with Python:…

Filed under: Astroinformatics,Parallel Programming,Python — Patrick Durusau @ 3:52 pm

Parallel Astronomical Data Processing with Python: Recipes for multicore machines by Bruce Berriman.

From the post:

Most astronomers (myself included) have a high performance compute engine on their desktops. Modern computers now contain multicore processors, whose development was prompted by the need to reduce heat dissipation and power consumption but which give users a powerful processing machine at their fingertips. Singh, Browne and Butler have recently posted a preprint on astro-ph, submitted to Astronomy and Computing, that offers recipes in Python for running data parallel processing on multicore machines. Such machines offer an alternative to grids, clouds and clusters for many tasks, and the authors give examples based on commonly used astronomy toolkits.

The paper restricts itself to the use of CPython’s native multiprocessing module, for two reasons: much astronomical software is written in it, and it places sufficiently strong restrictions on managing threads launched by the OS that it can make parallel jobs run slower than serial jobs (not so for other flavors of Python, though, such as PyPy and Jython). The authors also chose to study data parallel applications, which are common in astronomy, rather than task parallel applications. The heart of the paper is a comparison of three approaches to multiprocessing in Python, with sample code snippets for each:
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Bruce’s quick overview will give you the motivation to read this paper.

Astronomical data is easier to process in parallel than some data.

Suggestions on how to transform other data to make it easier to process in parallel?

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